Update: I have not been able to determine which wire to check at the ECU, but my son changes oil for Nissan and a mechanic from there came over this week to help troubleshoot. I told him everything I had done and in his experience, he suggested the EGR valve. I didn't really understand how a faulty EGR would only affect only one cyl. but he said he had seen it so I pulled it. And it was faulty. I changed it with no difference. Still a solid miss. I'm going to keep trying to locate the wire at the ECU but, from what i can see all the wiring looks to be in it's place.
I feel I should tell more about the vehicle. I held back on the first post because I didn't want to write a book about something someone could point me to quickly, I'll still try to summarize. About 4 yrs ago I bought the truck. Shadetree mechanic had been working on it. (Engine parts missing, bolts missing, stripped, etc.) I bought it for me and my son to rebuild for his first vehicle, (I know I'm cheap.) He drove it awhile and we sold it to our neighbor who drove it on the interstate daily and it ran hot. Parked in his yard for two years and did not run. A couple months ago I repurchased. Found blown head gasket. Reworked the head. Installed and found a miss on #2 cyl. The blow gasket explains the EGR valve faulty because of the water it was spitting out. Also water in the crankcase. Oil was extremely milky. Obviously, I changed before testing after the head replacement and will change again. In original post i said I have not checked the compression, but don't feel it's necessary.
Lastly, very strong smell of fuel when it cranks. like raw fuel almost. Thanks for any help team. I appreciate it. I really don't want to pull the dash to look for a shorted wire that is not actually there.